This is a web server implementation of a method for predicting DNA-binding proteins residues and DNA-protein binding modes. The program uses a nonspecific B-DNA to probe the binding site on a protein known with DNA-binding function. Details are described in the reference below.
To use the web service, please upload a protein structure file in PDB format. The results will be sent back to your through the e-mail address that you provided. Note the size of the protein is currently limited to 250 residues.
This service is freely available to ALL users.
If you find the service useful, please cite the following publication:
M. Gao and J. Skolnick. 2009. From nonspecific DNA-protein encounter complexes to the prediction of DNA-protein interactions. 5(11):e1000341. PDF
SUBMIT YOUR STRUCTURE HERE
This page is maintained by Mu Gao.